species:   Scscl
pid:       PID1639
parent:    Ssc-milR-115
paralog:   
locus:     NW_001820824.1:18523-18597
matures:   ['UGAUGCAAGAUCCUAGGAGGU', 'CUCCUUAUAUGCAUCAUG']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820824.1:18523-18597

0 out of bounds
9 alignments
9 proper strand
9 stranded perfect matches

        *********************             ************************         
AGUUUUGUUUGCUCCUUAUAUGCAUCAUGCAAUAUAUAUGCAUAUGAUGCAAGAUCCUAGGAGGUCAACAAUAAC
.((((((((..(((((.((.(((((((((((.......))))..)))))))..))...)))))...))))).)))
--------------------------------------------UGAUGCAAGAUCCUAGGAGGU---------- l=21 a=0 c
-----------CUCCUUAUAUGCAUCAUG---------------------------------------------- l=18 a=0 c*
--------------------------------------------UGAUGCAAGAUCCUAGGAGGUC--------- l=22 a=2 ma
----------GCUCCUUAUAUGCAUCAUG---------------------------------------------- l=19 a=0 ma*

-----------------------------------------------UGCAAGAUCCUAGGAGGUCAAC------ l=22 a=1 
--------------------------------------------UGAUGCAAGAUCCUAGGAGGUC--------- l=22 a=2 (ma)
--------------------------------------------UGAUGCAAGAUCCUAGGAGGUCA-------- l=23 a=1 
--------------------------------------------UGAUGCAAGAUCCUAGGAGGUCAA------- l=24 a=1 
------------------------------------UAUGCAUAUGAUGCAAGAUCCU----------------- l=22 a=1 
----------------------------------UAUAUGCAUAUGAUGCAAGAUC------------------- l=22 a=1 
--------------------------------UAUAUAUGCAUAUGAUGCAAGA--------------------- l=22 a=1 
---------------------------UGCAAUAUAUAUGCAUAUGAUG-------------------------- l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101000
fn-111
